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Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics

Alexey Vorobev , Marion Dupouy , Quentin Carradec , Tom O. Delmont , Anita Annamalé , et al.
Genome Research, 2020, 30 (4), pp.647-659. ⟨10.1101/gr.253070.119⟩
Journal articles hal-02573621v1
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Is adaptive therapy natural?

Frédéric Thomas , Emmanuel Donnadieu , Guillaume Charriere , Camille Jacqueline , Aurélie Tasiemski , et al.
PLoS Biology, 2018, 16 (10), pp.e2007066. ⟨10.1371/journal.pbio.2007066⟩
Journal articles hal-01887358v1
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Vulnerability of sandy coasts to climate variability

Déborah Idier , Bruno Castelle , Marc Poumadère , Yann Balouin , Raquel Bohn Bertoldo , et al.
Climate Research, 2013, 57 (1), pp.19-44. ⟨10.3354/cr01153⟩
Journal articles hal-02172312v1
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Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara

Zoé Mériguet , Anna Oddone , David Le Guen , Thibaut Pollina , Romain Bazile , et al.
Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.916025⟩
Journal articles hal-03877194v1

Évaluation et suivi de la biodiversité dans l’île de Moorea, Polynésie française : approche méthodologique appliquée aux écosystèmes terrestres et marins

Hervé Chevillotte , Jean-Yves Meyer , Tiscar Mellado-Forichon , Jacques Florence , Esther Emmanuelli , et al.
Revue d'Écologie, 2014
Journal articles hal-01306285v1

Generation of Synthetic Populations in Social Simulations: A Review of Methods and Practices

Kevin Chapuis , Patrick Taillandier , Alexis Drogoul , Patrick Taillandier
Journal of Artificial Societies and Social Simulation, 2022, 25 (2), pp.6. ⟨10.18564/jasss.4762⟩
Journal articles hal-04106638v1
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Tracing the invertebrate herpesviruses in the global sequence datasets

Umberto Rosani , Morgan Gaia , Tom O Delmont , Mart Krupovic
Frontiers in Marine Science, 2023, 10, pp.1159754. ⟨10.3389/fmars.2023.1159754⟩
Journal articles pasteur-04162270v1
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COMOKIT: A Modeling Kit to Understand, Analyze, and Compare the Impacts of Mitigation Policies Against the COVID-19 Epidemic at the Scale of a City

Benoit Gaudou , Nghi Quang Huynh , Damien Philippon , Arthur Brugière , Kevin Chapuis , et al.
Frontiers in Public Health, 2020, 8, pp.563247. ⟨10.3389/fpubh.2020.563247⟩
Journal articles hal-02968260v1
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Origin of an enigmatic regional Mio-Pliocene unconformity on the Demerara plateau

F. Pattier , L. Loncke , P. Imbert , V. Gaullier , C. Basile , et al.
Marine Geology, 2015, 365, pp.21-35. ⟨10.1016/j.margeo.2015.04.001⟩
Journal articles hal-01365920v1

Disparate genetic divergence patterns in three corals across a pan-Pacific environmental gradient highlight species-specific adaptation

Christian Voolstra , Benjamin Hume , Eric Armstrong , Guinther Mitushasi , Barbara Porro , et al.
npj Biodiversity, 2023, 2 (1), pp.15. ⟨10.1038/s44185-023-00020-8⟩
Journal articles hal-04176277v1
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Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Eric J Armstrong , Julie Lê-Hoang , Quentin Carradec , Jean-Marc Aury , Benjamin Noel , et al.
Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩
Journal articles cea-04171796v1
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MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics

Benjamin Churcheward , Maxime Millet , Audrey Bihouée , Guillaume Fertin , Samuel Chaffron
mSystems, 2022, 7 (4), ⟨10.1128/msystems.00432-22⟩
Journal articles hal-03781944v1
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Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean

Maggie M Reddy , Corentine Goossens , Yuxiang Zhou , Slimane Chaib , Delphine Raviglione , et al.
Communications Earth & Environment, 2023, 4 (1), pp.281. ⟨10.1038/s43247-023-00942-y⟩
Journal articles hal-04184949v1

Évaluation et suivi de la biodiversité dans l'île de Moorea, Polynésie française : approche méthodologique appliquée aux écosystèmes terrestres et marins = Value and monitoring of biodiversity on Moorea Island, French Polynesia : a methodological approach of terrestrial and marine ecosystems

Hervé Chevillotte , J. Meyer , T. Mellado-Forichon , Jacques Florence , E. Emmanuelli , et al.
Revue d'Écologie, 2014, Revue d'Ecologie-La Terre et la Vie, 69 (3-4), pp.267-284
Journal articles hal-02498398v1
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Large scale patterns of marine diatom richness: Drivers and trends in a changing ocean

Greta Busseni , Luigi Caputi , Roberta Piredda , Paul Fremont , Bruno Hay Mele , et al.
Global Ecology and Biogeography, 2020, 29 (11), pp.1915-1928. ⟨10.1111/geb.13161⟩
Journal articles hal-02992584v1

Wave characteristics and morphological variations of pocket beaches in a coral reef–lagoon setting, Mayotte Island, Indian Ocean

Matthieu Jeanson , Edward J. Anthony , Franck Dolique , Aline Aubry
Geomorphology, 2013, 182, pp.190-209. ⟨10.1016/j.geomorph.2012.11.013⟩
Journal articles hal-02542822v1

Processus morphodynamiques et sédimentaires dans les mangroves en érosion de Mayotte, océan Indien

Matthieu Jeanson , Franck Dolique , Edward J. Anthony
Vertigo, 2018, Volume 18 numéro 2, ⟨10.4000/vertigo.20531⟩
Journal articles hal-02542853v1
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Personal history of infections and immunotherapy: Unexpected links and possible therapeutic opportunities

Camille Jacqueline , Nathalie Bonnefoy , Guillaume Charrière , Frédéric Thomas , Benjamin Roche
OncoImmunology, 2018, 7 (8), pp.e1466019. ⟨10.1080/2162402X.2018.1466019⟩
Journal articles hal-01887524v1
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Designing social simulation to (seriously) support decision-making: COMOKIT, an agent-based modelling toolkit to analyse and compare the impacts of public health interventions against COVID-19

Alexis Drogoul , Patrick Taillandier , Benoit Gaudou , Marc Choisy , Kevin Chapuis , et al.
Scientific blog post hal-02968321v1
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Mirusviruses link herpesviruses to giant viruses

Morgan Gaïa , Lingjie Meng , Eric Pelletier , Patrick Forterre , Chiara Vanni , et al.
Nature, 2023, 616 (7958), pp.783-789. ⟨10.1038/s41586-023-05962-4⟩
Journal articles pasteur-04085734v1

Marine snow originating from appendicularian houses: Age-dependent settling characteristics

Fabien Lombard , Thomas Kiorboe
Deep Sea Research Part I: Oceanographic Research Papers, 2010, 57 (10), pp.1304-1313. ⟨10.1016/j.dsr.2010.06.008⟩
Journal articles istex hal-04020174v1

DYNALIT : Dynamique du Littoral et Traitde Côte

Lucie Cocquempot , Agnès Baltzer , Frederic Bouchette , Bruno Castelle , Eric Chaumillon , et al.
25e Réunion des Sciences de la Terre, Société Géologique de France, Oct 2016, Caen, France. pp.84
Conference papers insu-01387873v1
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Juan José Pierella Karlusich , Eric Pelletier , Fabien Lombard , Madeline Carsique , Etienne Dvorak , et al.
Nature Communications, 2021, 12, pp.4160. ⟨10.1038/s41467-021-24299-y⟩
Journal articles hal-03334117v2

Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean

Tom Delmont , Morgan Gaia , Damien Hinsinger , Paul Frémont , Chiara Vanni , et al.
Cell Genomics, 2022, 2 (5), pp.100123. ⟨10.1016/j.xgen.2022.100123⟩
Journal articles hal-03872935v2
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Microbial community functioning during plant litter decomposition

Simon Schroeter , Damien Eveillard , Samuel Chaffron , Johanna Zoppi , Bernd Kampe , et al.
Scientific Reports, 2022, 12 (1), pp.7451. ⟨10.1038/s41598-022-11485-1⟩
Journal articles hal-03781927v1
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MiBiOmics: an interactive web application for multi-omics data exploration and integration

Johanna Zoppi , Jean-François Guillaume , Michel Neunlist , Samuel Chaffron
BMC Bioinformatics, 2021, 22 (1), ⟨10.1186/s12859-020-03921-8⟩
Journal articles hal-03101013v1

An orientation for coastal disaster risks management and prevention policy in a global warming context: case study in Ouvea (New Caledonia).

Matthieu Le Duff , Pascal Dumas , Olivier Cohen , Michel Allenbach
Journal articles hal-03049748v1
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African humid periods triggered the reactivation of a large river system in Western Sahara

C. Skonieczny , Philippe Paillou , A. Bory , G. Bayon , L. Biscara , et al.
Nature Communications, 2015, 6, pp.8751 ⟨10.1038/ncomms9751⟩
Journal articles hal-01250419v1
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals

Alice Rouan , Melanie Pousse , Nadir Djerbi , Barbara Porro , Guillaume Bourdin , et al.
Nature Communications, 2023, 14 (1), pp.3038. ⟨10.1038/s41467-023-38499-1⟩
Journal articles cea-04171809v1
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Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

Magali Lescot , Pascal Hingamp , Kenji Kojima , Emilie Villar , Sarah Romac , et al.
ISME Journal, 2016, 10 (5), pp.1134-1146. ⟨10.1038/ismej.2015.192⟩
Journal articles hal-02964380v1